ASKSAGE: Sage Q&A Forum - RSS feedhttps://ask.sagemath.org/questions/Q&A Forum for SageenCopyright Sage, 2010. Some rights reserved under creative commons license.Thu, 22 Aug 2013 12:19:50 +0200RAM problem in script executionhttps://ask.sagemath.org/question/10462/ram-problem-in-script-execution/Hi experts!
I wrote the next code. In 1-2 hours of execution time the RAM of my laptop (8gb) is filled and the sistem crash:
from scipy.stats import uniform
import numpy as np
cant_de_cadenas=[400,600,700,800]
os.makedirs('directory')
np.savetxt(here 'cant_de_cadenas' is saved as .csv in folder 'directory')
A1=mp.array([])
...
A6=mp.array([])
import time
for N in cant_de_cadenas:
start=time.clock()
B1=mp.array([])
...
B6=mp.array([])
for u in srange (100):
array_1 = uniform.rvs(loc=-2,scale=4, size=N)
array_2 = uniform.rvs(loc=-2,scale=4, size=N)
array_3 = uniform.rvs(loc=-1,scale=7, size=N)
array_4 = 1/np.tan(array_3)
array_5 = uniform.rvs(loc=-1,scale=1, size=N)
array_6 = function(array_5)
array_7 = function(array_6, array_5 and array_4)
array_8 = function(array_1 and array_7)
array_9 = function(array_2 and array_7)
M=np.zeros([N+4,N+4])
for j in srange(N+4):
if j>0:
two arrays (C and D) with len=j-1 are created
for k in srange (j):
if C[k]<=0 and D[k]<=0:
M[j,k]=1
if j+1<N+4:
two arrays (C and D) with len=((N+4)-j-1) are created
for k in srange ((N+4)-j-1):
if C[k]<=0 and D[k]<=0:
M[j,k+j+1]=1
An algorithm with matrix M is executed and values 'b1' and 'b2' are generated
M_hor=M.copy()
Some values in M_hor are changed and an algorithm with matrix M_hor is executed and values 'b3' and 'b4' are generated
M_ver=M.copy()
Some values in M_hor are changed and an algorithm with matrix M_hor is executed and values 'b5' and 'b6' are generated
B1=np.append(B1,b1)
...
B6=np.append(B6,b6)
A1=np.append(A1,sum(B1)/100)
...
A6=np.append(A6,sum(B6)/100)
Like you can see, len(A1)=...=len(A6)=len( cant_de_cadenas) (because in An are the average values of 100 repetitions -included in Bn-).
While many arrays are created (array_1,array_2 etc , with lenght N), in each one of the 100 cycles 'for u in srange (100)' these arrays are overwritten (with the same name).
The same applies to B1,...,B6 arrays: in each one of the len(cant_de_cadenas) cyles 'for N in srange (cant_de_cadenas)' these arrays are overwritten (with the same name).
I tryed with gc and gc.collect() and nothing work!
In addition, i cant use memory_profiler module in sage.
What am I doing wrong? Why the memory becomes full while running (starts with 10% of RAM used and in 1-2hour is totally full used)?
Please help me, I'm totally stuck!
Thanks a lot!mresimulatorThu, 22 Aug 2013 12:19:50 +0200https://ask.sagemath.org/question/10462/